DetoxFungiV1, Main, Exploration, bibRecord, 000338

The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity.

Identifieur interne : 000338 ( Main/Exploration ); précédent : 000337; suivant : 000339

The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity.

Auteurs : Mouna Mahjoubi [Tunisie] ; Habibu Aliyu [Allemagne] ; Simone Cappello [Italie] ; Mohamed Naifer [Tunisie] ; Yasmine Souissi [Tunisie] ; Don A. Cowan [Afrique du Sud] ; Ameur Cherif [Tunisie]

Source :

PloS one [ 1932-6203 ] ; 2019.

RBID : pubmed:31550268

Descripteurs français

KwdFr :
- Alcaligenes (génétique), Alcaligenes (isolement et purification), Alcaligenes (métabolisme), Dépollution biologique de l'environnement (MeSH), Famille multigénique (MeSH), Génome bactérien (MeSH), Humains (MeSH), Hydrocarbures (métabolisme), Phylogenèse (MeSH), Polluants environnementaux (métabolisme), Spécificité d'espèce (MeSH), Sédiments géologiques (microbiologie), Tensioactifs (métabolisme), Voies et réseaux métaboliques (génétique).
MESH :
- génétique : Alcaligenes, Voies et réseaux métaboliques.
- isolement et purification : Alcaligenes.
- microbiologie : Sédiments géologiques.
- métabolisme : Alcaligenes, Hydrocarbures, Polluants environnementaux, Tensioactifs.
- Dépollution biologique de l'environnement, Famille multigénique, Génome bactérien, Humains, Phylogenèse, Spécificité d'espèce.

English descriptors

KwdEn :
- Alcaligenes (genetics), Alcaligenes (isolation & purification), Alcaligenes (metabolism), Biodegradation, Environmental (MeSH), Environmental Pollutants (metabolism), Genome, Bacterial (MeSH), Geologic Sediments (microbiology), Humans (MeSH), Hydrocarbons (metabolism), Metabolic Networks and Pathways (genetics), Multigene Family (MeSH), Phylogeny (MeSH), Species Specificity (MeSH), Surface-Active Agents (metabolism).
MESH :
- chemical , metabolism : Environmental Pollutants, Hydrocarbons, Surface-Active Agents.
- genetics : Alcaligenes, Metabolic Networks and Pathways.
- isolation & purification : Alcaligenes.
- metabolism : Alcaligenes.
- microbiology : Geologic Sediments.
- Biodegradation, Environmental, Genome, Bacterial, Humans, Multigene Family, Phylogeny, Species Specificity.

Abstract

Environmental contamination with hydrocarbons though natural and anthropogenic activities is a serious threat to biodiversity and human health. Microbial bioremediation is considered as the effective means of treating such contamination. This study describes a biosurfactant producing bacterium capable of utilizing crude oil and various hydrocarbons as the sole carbon source. Strain BU33N was isolated from hydrocarbon polluted sediments from the Bizerte coast (northern Tunisia) and was identified as Alcaligenes aquatilis on the basis of 16S rRNA gene sequence analysis. When grown on crude oil and phenanthrene as sole carbon and energy sources, isolate BU33N was able to degrade ~86%, ~56% and 70% of TERHc, n-alkanes and phenanthrene, respectively. The draft genome sequence of the A. aquatilis strain BU33N was assembled into one scaffold of 3,838,299 bp (G+C content of 56.1%). Annotation of the BU33N genome resulted in 3,506 protein-coding genes and 56 rRNA genes. A large repertoire of genes related to the metabolism of aromatic compounds including genes encoding enzymes involved in the complete degradation of benzoate were identified. Also genes associated with resistance to heavy metals such as copper tolerance and cobalt-zinc-cadmium resistance were identified in BU33N. This work provides insight into the genomic basis of biodegradation capabilities and bioremediation/detoxification potential of A. aquatilis BU33N.

DOI: 10.1371/journal.pone.0221574
PubMed: 31550268
PubMed Central: PMC6759156

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000331
to stream Main, to step Curation: 000331

Le document en format XML

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<term>Alcaligenes (isolation & purification)</term>
<term>Alcaligenes (metabolism)</term>
<term>Biodegradation, Environmental (MeSH)</term>
<term>Environmental Pollutants (metabolism)</term>
<term>Genome, Bacterial (MeSH)</term>
<term>Geologic Sediments (microbiology)</term>
<term>Humans (MeSH)</term>
<term>Hydrocarbons (metabolism)</term>
<term>Metabolic Networks and Pathways (genetics)</term>
<term>Multigene Family (MeSH)</term>
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<term>Alcaligenes (isolement et purification)</term>
<term>Alcaligenes (métabolisme)</term>
<term>Dépollution biologique de l'environnement (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Génome bactérien (MeSH)</term>
<term>Humains (MeSH)</term>
<term>Hydrocarbures (métabolisme)</term>
<term>Phylogenèse (MeSH)</term>
<term>Polluants environnementaux (métabolisme)</term>
<term>Spécificité d'espèce (MeSH)</term>
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<term>Voies et réseaux métaboliques (génétique)</term>
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<term>Surface-Active Agents</term>
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<term>Humans</term>
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<term>Famille multigénique</term>
<term>Génome bactérien</term>
<term>Humains</term>
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<front><div type="abstract" xml:lang="en">Environmental contamination with hydrocarbons though natural and anthropogenic activities is a serious threat to biodiversity and human health. Microbial bioremediation is considered as the effective means of treating such contamination. This study describes a biosurfactant producing bacterium capable of utilizing crude oil and various hydrocarbons as the sole carbon source. Strain BU33N was isolated from hydrocarbon polluted sediments from the Bizerte coast (northern Tunisia) and was identified as Alcaligenes aquatilis on the basis of 16S rRNA gene sequence analysis. When grown on crude oil and phenanthrene as sole carbon and energy sources, isolate BU33N was able to degrade ~86%, ~56% and 70% of TERHc, n-alkanes and phenanthrene, respectively. The draft genome sequence of the A. aquatilis strain BU33N was assembled into one scaffold of 3,838,299 bp (G+C content of 56.1%). Annotation of the BU33N genome resulted in 3,506 protein-coding genes and 56 rRNA genes. A large repertoire of genes related to the metabolism of aromatic compounds including genes encoding enzymes involved in the complete degradation of benzoate were identified. Also genes associated with resistance to heavy metals such as copper tolerance and cobalt-zinc-cadmium resistance were identified in BU33N. This work provides insight into the genomic basis of biodegradation capabilities and bioremediation/detoxification potential of A. aquatilis BU33N.</div>
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<Abstract><AbstractText>Environmental contamination with hydrocarbons though natural and anthropogenic activities is a serious threat to biodiversity and human health. Microbial bioremediation is considered as the effective means of treating such contamination. This study describes a biosurfactant producing bacterium capable of utilizing crude oil and various hydrocarbons as the sole carbon source. Strain BU33N was isolated from hydrocarbon polluted sediments from the Bizerte coast (northern Tunisia) and was identified as Alcaligenes aquatilis on the basis of 16S rRNA gene sequence analysis. When grown on crude oil and phenanthrene as sole carbon and energy sources, isolate BU33N was able to degrade ~86%, ~56% and 70% of TERHc, n-alkanes and phenanthrene, respectively. The draft genome sequence of the A. aquatilis strain BU33N was assembled into one scaffold of 3,838,299 bp (G+C content of 56.1%). Annotation of the BU33N genome resulted in 3,506 protein-coding genes and 56 rRNA genes. A large repertoire of genes related to the metabolism of aromatic compounds including genes encoding enzymes involved in the complete degradation of benzoate were identified. Also genes associated with resistance to heavy metals such as copper tolerance and cobalt-zinc-cadmium resistance were identified in BU33N. This work provides insight into the genomic basis of biodegradation capabilities and bioremediation/detoxification potential of A. aquatilis BU33N.</AbstractText>
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<ForeName>Mouna</ForeName>
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<ForeName>Simone</ForeName>
<Initials>S</Initials>
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<Author ValidYN="Y"><LastName>Souissi</LastName>
<ForeName>Yasmine</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Univ. Manouba, ISBST, BVBGR-LR11ES31, Biotechpole SidiThabet, Ariana, Tunisia.</Affiliation>
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<Author ValidYN="Y"><LastName>Cowan</LastName>
<ForeName>Don A</ForeName>
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The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity.

The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity.

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